The complete cDNA and polypeptide sequences of human erythroid alpha-spectrin

J Biol Chem. 1990 Mar 15;265(8):4434-43.

Abstract

Overlapping human erythroid alpha-spectrin cDNA clones were isolated from lambda gt11 libraries constructed from cDNAs of human fetal liver and erythroid bone marrow. The composite 8001-base pair (bp) cDNA nucleotide sequence contains 187-bp 5'- and 528-bp 3'-untranslated regions and has a single long open reading frame of 7287 bp that encodes a polypeptide of 2429 residues. As previously described (Speicher, D. W., and Marchesi, V. T. (1984) Nature 311, 177-180), spectrin is composed largely of homologous 106-amino acid repeat units. From the amino acid sequence deduced from the cDNA, alpha-spectrin can be divided into 22 segments. Segments 1-9 and 12-19 are homologous and can therefore be considered repeats; the average number of identical residues in pairwise comparisons of these repeats is 22 out of 106, or 21%. Of these 17 repeats, 11 are exactly 106 amino acids in length, whereas five others differ from this length by a single residue. Segments 11, 20, and 21, although less homologous, appear to be related to the more highly conserved repeat units. The very N-terminal 22 residues, segment 10, which is atypical both in length and sequence, and the C-terminal 150 residues in segment 22 appear to be unrelated to the conserved repeat units. The sequence of the erythroid alpha-spectrin polypeptide chain is compared to that of human alpha-fodrin and chicken alpha-actinin to which it is related. alpha-Spectrin is more distantly related to dystrophin.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Actinin
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Brain / embryology
  • Brain Chemistry
  • Carrier Proteins
  • Chickens
  • DNA / genetics*
  • Erythrocytes / analysis*
  • Humans
  • Liver / analysis
  • Liver / embryology
  • Microfilament Proteins
  • Molecular Sequence Data
  • Poly A / analysis
  • Polymorphism, Genetic
  • RNA / analysis
  • RNA, Messenger / analysis
  • Repetitive Sequences, Nucleic Acid
  • Restriction Mapping
  • Sequence Homology, Nucleic Acid
  • Software
  • Spectrin / genetics*

Substances

  • Carrier Proteins
  • Microfilament Proteins
  • RNA, Messenger
  • fodrin
  • Actinin
  • Spectrin
  • Poly A
  • RNA
  • DNA

Associated data

  • GENBANK/J05244
  • GENBANK/M61775
  • GENBANK/M61776
  • GENBANK/M61777
  • GENBANK/M61778
  • GENBANK/M61779
  • GENBANK/M61780
  • GENBANK/M61781
  • GENBANK/M61783
  • GENBANK/M61784
  • GENBANK/M61786