Agrococcus lahaulensis sp. nov., isolated from a cold desert of the Indian Himalayas

Int J Syst Evol Microbiol. 2006 Aug;56(Pt 8):1807-1810. doi: 10.1099/ijs.0.64247-0.

Abstract

The taxonomic position of a lemon-yellow-pigmented actinobacterium, strain K22-21(T), isolated from a soil sample from Lahaul-Spiti Valley in the Indian Himalayas, was determined using a polyphasic approach. The strain had phenotypic and chemical properties that were consistent with its classification in the genus Agrococcus. Alignment of the 16S rRNA gene sequence of strain K22-21(T) with sequences from Agrococcus jenensis DSM 9580(T), Agrococcus baldri DSM 14215(T) and Agrococcus citreus DSM 12453(T) revealed similarities of 98.5, 96.8 and 96.6 %, respectively. However, the level of DNA-DNA relatedness between strain K22-21(T) and A. jenensis was 55.1 %. The novel strain could be distinguished from type strains of the three species of the genus Agrococcus using DNA-DNA relatedness and phenotypic data. Based on these differences, strain K22-21(T) (=MTCC 7154(T)=DSM 17612(T)) should be classified as the type strain of a novel species of Agrococcus, for which the name Agrococcus lahaulensis sp. nov. is proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / isolation & purification
  • Actinomycetales / physiology
  • Cold Temperature
  • DNA, Bacterial / genetics
  • Desert Climate
  • India
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Homology, Nucleic Acid
  • Soil Microbiology*
  • Species Specificity

Substances

  • DNA, Bacterial
  • RNA, Bacterial
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/DQ156908