Conservative repair of a chromosomal double-strand break by single-strand DNA through two steps of annealing

Mol Cell Biol. 2006 Oct;26(20):7645-57. doi: 10.1128/MCB.00672-06. Epub 2006 Aug 14.

Abstract

The repair of chromosomal double-strand breaks (DSBs) is essential to normal cell growth, and homologous recombination is a universal process for DSB repair. We explored DSB repair mechanisms in the yeast Saccharomyces cerevisiae using single-strand oligonucleotides with homology to both sides of a DSB. Oligonucleotide-directed repair occurred exclusively via Rad52- and Rad59-mediated single-strand annealing (SSA). Even the SSA domain of human Rad52 provided partial complementation for a null rad52 mutation. The repair did not involve Rad51-driven strand invasion, and moreover the suppression of strand invasion increased repair with oligonucleotides. A DSB was shown to activate targeting by oligonucleotides homologous to only one side of the break at large distances (at least 20 kb) from the break in a strand-biased manner, suggesting extensive 5' to 3' resection, followed by the restoration of resected DNA to the double-strand state. We conclude that long resected chromosomal DSB ends are repaired by a single-strand DNA oligonucleotide through two rounds of annealing. The repair by single-strand DNA can be conservative and may allow for accurate restoration of chromosomal DNAs with closely spaced DSBs.

Publication types

  • Research Support, N.I.H., Intramural

MeSH terms

  • Chromosomes, Fungal / genetics*
  • DNA Damage / genetics*
  • DNA Repair / genetics*
  • DNA, Fungal / genetics*
  • Oligonucleotides / genetics
  • Rad52 DNA Repair and Recombination Protein / genetics
  • Recombination, Genetic / genetics
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae Proteins / genetics

Substances

  • DNA, Fungal
  • Oligonucleotides
  • RAD52 protein, S cerevisiae
  • Rad52 DNA Repair and Recombination Protein
  • Saccharomyces cerevisiae Proteins