The origin, course and distribution of pre- and postganglionic neurons of the pterygopalatine ganglion (PPG) in the rat were studied using acetylcholinesterase staining, wheat germ agglutinin coupled to horseradish peroxidase (WGA-HRP) histochemistry and autoradiography. These methods were used in a selected and planned fashion to reveal details concerning the innervation of the lacrimal gland and portions of the eye. The PPG in rats consists of a rostral triangular portion and additional perikarya surrounding the distal part of the major petrosal nerve. Fibres from the superior cervical ganglion (SCG) reach the PPG via the inferior petrosal sinus. Application of WGA-HRP was made after transections: (1) rostral to the PPG; and (2) caudal to the PPG. The first of these applications labelled mainly fibres in the PPG; the second application labelled preganglionic parasympathetic brainstem neurons dorsolateral to the facial nucleus (i.e. the lacrimal nucleus), rostral cells in the SCG and trigeminal sensory fibres. WGA-HRP injections of the lacrimal gland, the conjunctiva and the anterior chamber of the eye all labelled cells in different parts of the PPG. This means that the PPG contains sensory and sympathetic nerve fibres and that the PPG has a topographical organisation along the rostrocaudal axis. Isotope injections of the PPG anterogradely labelled fibres passing through the ciliary ganglion that innervated the conjunctiva, the limbus and parts of the choroid.