Microcella alkaliphila sp. nov., a novel member of the family Microbacteriaceae isolated from a non-saline alkaline groundwater, and emended description of the genus Microcella

Int J Syst Evol Microbiol. 2006 Oct;56(Pt 10):2313-2316. doi: 10.1099/ijs.0.64320-0.

Abstract

A high-G+C-content Gram-positive bacterium, designated as strain AC4r(T), was isolated from a highly alkaline, non-saline groundwater environment (pH 11.4). This organism formed small rod-shaped cells, was aerobic, heterotrophic, catalase-positive and oxidase-negative and had an optimum growth temperature of 35 degrees C and an optimum pH of 9.5. The strain possessed a B2beta-type cell-wall peptidoglycan, with d-Orn as the diagnostic diamino acid. The major respiratory quinones were unsaturated menaquinones with 13 and 14 isoprene units. The predominant fatty acids were anteiso-15 : 0, iso-16 : 0, iso-14 : 0 and iso-15 : 0. The G+C content of the DNA was 67.1 mol%. In a 16S rRNA gene sequence analysis, strain AC4r(T) showed the highest level of similarity (99.2 %) to the type strain of Microcella putealis; however, the DNA-DNA reassociation value between these two organisms was low (38.3 %). On the basis of phylogenetic analysis, the DNA-DNA reassociation value and distinct phenotypic characteristics, strain AC4r(T) represents a novel species within the genus Microcella, for which the name Microcella alkaliphila sp. nov. is proposed. The type strain is AC4r(T) (=LMG 22690(T)=CIP 108473(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / genetics
  • Actinomycetales / isolation & purification
  • Actinomycetales / physiology
  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / analysis
  • DNA, Ribosomal / analysis
  • Fresh Water / microbiology*
  • Genes, rRNA
  • Hydrogen-Ion Concentration
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phenotype
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sodium Chloride
  • Species Specificity

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • Sodium Chloride

Associated data

  • GENBANK/AJ717385