Rational design of a nonpeptide general chemical scaffold for reversible inhibition of PDZ domain interactions

Bioorg Med Chem Lett. 2007 Jan 15;17(2):549-52. doi: 10.1016/j.bmcl.2006.10.006. Epub 2006 Oct 6.

Abstract

Novel small molecules were designed to specifically target the ligand-binding pocket of a PDZ domain. Iterative molecular docking and modeling allowed the design of an indole scaffold 10a as a reversible inhibitor of ligand binding. The 10a scaffold inhibited the interaction between MAGI-3 and PTEN and showed cellular activities that are consistent with the inhibition of NHERF-1 function.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Proteins, Signal Transducing / chemistry
  • Carrier Proteins / antagonists & inhibitors*
  • Cell Adhesion Molecules
  • Cell Adhesion Molecules, Neuronal
  • Cell Line
  • Computer Simulation
  • Drug Design
  • Drug Evaluation, Preclinical
  • Guanylate Kinases
  • Humans
  • Ligands
  • Membrane Proteins / chemistry
  • Models, Molecular
  • Molecular Conformation
  • PTEN Phosphohydrolase / chemistry
  • Phosphoproteins / antagonists & inhibitors
  • Receptors, Drug / drug effects
  • Sodium-Hydrogen Exchangers / antagonists & inhibitors

Substances

  • Adaptor Proteins, Signal Transducing
  • Carrier Proteins
  • Cell Adhesion Molecules
  • Cell Adhesion Molecules, Neuronal
  • Ligands
  • Membrane Proteins
  • PDZK1 protein, human
  • Phosphoproteins
  • Receptors, Drug
  • Sodium-Hydrogen Exchangers
  • sodium-hydrogen exchanger regulatory factor
  • Guanylate Kinases
  • MAGI1 protein, human
  • PTEN Phosphohydrolase