Community annotation: procedures, protocols, and supporting tools

Genome Res. 2006 Nov;16(11):1329-33. doi: 10.1101/gr.5580606. Epub 2006 Oct 25.


Investigators at the Baylor College of Medicine Human Genome Sequencing Center (BCM-HGSC) and BeeBase organized a community-wide effort to manually annotate the honey bee (Apis mellifera) genome. Although various strategies for manual annotation have been used in the past, the value of dispersed community annotation has not yet been demonstrated. Here we make a case for the merit of dispersed community annotation. We present annotation procedures, standard protocols, and tools used for sequence analysis, data submission, and data management. We also report lessons learned from this dispersed community annotation effort for a metazoan genome.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Bees / genetics
  • Databases, Genetic
  • Genome, Human
  • Genomics / methods*
  • Genomics / statistics & numerical data
  • Humans
  • Models, Genetic
  • Molecular Sequence Data
  • Sequence Analysis

Associated data

  • GENBANK/CM000054
  • GENBANK/CM000055
  • GENBANK/CM000056
  • GENBANK/CM000057
  • GENBANK/CM000058
  • GENBANK/CM000059
  • GENBANK/CM000060
  • GENBANK/CM000061
  • GENBANK/CM000062
  • GENBANK/CM000063
  • GENBANK/CM000064
  • GENBANK/CM000065
  • GENBANK/CM000066
  • GENBANK/CM000067
  • GENBANK/CM000068
  • GENBANK/CM000069