PigGIS: Pig Genomic Informatics System

Nucleic Acids Res. 2007 Jan;35(Database issue):D654-7. doi: 10.1093/nar/gkl808. Epub 2006 Nov 7.


Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of sequence data, including whole genome shotgun (WGS) reads and expressed sequence tags (ESTs), and achieves a successful mapping solution to the low-coverage genome problem. With the data presently available, we have identified a total of 15 700 pig consensus sequences covering 18.5 Mb of the homologous human exons. We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at http://www.piggis.org/ and http://pig.genomics.org.cn/.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Chromosome Mapping
  • Consensus Sequence
  • Databases, Nucleic Acid*
  • Expressed Sequence Tags / chemistry
  • Genomics*
  • Humans
  • Internet
  • Polymorphism, Single Nucleotide
  • Sequence Alignment
  • Swine / genetics*
  • User-Computer Interface