Structural mechanism of RPA loading on DNA during activation of a simple pre-replication complex

EMBO J. 2006 Nov 29;25(23):5516-26. doi: 10.1038/sj.emboj.7601432. Epub 2006 Nov 16.

Abstract

We report that during activation of the simian virus 40 (SV40) pre-replication complex, SV40 T antigen (Tag) helicase actively loads replication protein A (RPA) on emerging single-stranded DNA (ssDNA). This novel loading process requires physical interaction of Tag origin DNA-binding domain (OBD) with the RPA high-affinity ssDNA-binding domains (RPA70AB). Heteronuclear NMR chemical shift mapping revealed that Tag-OBD binds to RPA70AB at a site distal from the ssDNA-binding sites and that RPA70AB, Tag-OBD, and an 8-nucleotide ssDNA form a stable ternary complex. Intact RPA and Tag also interact stably in the presence of an 8-mer, but Tag dissociates from the complex when RPA binds to longer oligonucleotides. Together, our results imply that an allosteric change in RPA quaternary structure completes the loading reaction. A mechanistic model is proposed in which the ternary complex is a key intermediate that directly couples origin DNA unwinding to RPA loading on emerging ssDNA.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Antigens, Polyomavirus Transforming / chemistry*
  • Binding Sites
  • DNA Replication*
  • DNA, Single-Stranded / chemistry*
  • Humans
  • Magnetic Resonance Spectroscopy
  • Protein Interaction Mapping
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary
  • Replication Origin
  • Replication Protein A / chemistry*
  • Static Electricity

Substances

  • Antigens, Polyomavirus Transforming
  • DNA, Single-Stranded
  • RPA1 protein, human
  • Replication Protein A