Structural aspects of L-asparaginases, their friends and relations

Acta Biochim Pol. 2006;53(4):627-40. Epub 2006 Dec 1.

Abstract

Enzymes capable of converting L-asparagine to L-aspartate can be classified as bacterial-type or plant-type L-asparaginases. Bacterial-type L-asparaginases are further divided into subtypes I and II, defined by their intra-/extra-cellular localization, substrate affinity, and oligomeric form. Plant-type L-asparaginases are evolutionarily and structurally distinct from the bacterial-type enzymes. They function as potassium-dependent or -independent Ntn-hydrolases, similar to the well characterized aspartylglucosaminidases with (alphabeta)2 oligomeric structure. The review discusses the structural aspects of both types of L-asparaginases and highlights some peculiarities of their catalytic mechanisms. The bacterial-type enzymes are believed to have a disordered active site which gets properly organized on substrate binding. The plant-type enzymes, which are more active as isoaspartyl aminopeptidases, pose a chemical challenge common to other Ntn-hydrolases, which is how an N-terminal nucleophile can activate itself or cleave its own alpha-amide bond before the activation is even possible. The K+ -independent plant-type L-asparaginases show an unusual sodium coordination by main-chain carbonyl groups and have a key arginine residue which by sensing the arrangement at the oligomeric (alphabeta)-(alphabeta) interface is able to discriminate among substrates presented for hydrolysis.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Asparaginase / chemistry*
  • Asparaginase / classification
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / classification
  • Catalysis
  • Plant Proteins / chemistry
  • Plant Proteins / classification
  • Protein Conformation
  • Substrate Specificity

Substances

  • Bacterial Proteins
  • Plant Proteins
  • Asparaginase