Single nucleotide polymorphism array analysis to predict clinical outcome in neuroblastoma patients

J Pediatr Surg. 2006 Dec;41(12):2032-6. doi: 10.1016/j.jpedsurg.2006.08.002.

Abstract

Purpose: Neuroblastoma (NB) is a heterogeneous tumor and demonstrates favorable or unfavorable outcomes. In Japan, a nationwide NB mass screening (MS) had been performed on 6-month-old infants for approximately 20 years, which might have detected almost all NB including regressing/maturing tumors. To clarify the heterogeneity of this tumor, we examined genetic alterations in the representative cases using genomewide microarrays.

Methods: Genomic DNA was extracted from 198 NB tissue samples and paired blood samples including 76 MS-detected cases and analyzed by single nucleotide polymorphism arrays.

Results: The single nucleotide polymorphism array classified the genetic aberrations into 4 types: whole gain/loss type, partial gain/loss type, MYCN-amplified type, and silent type. Most MS-detecting cases belonged to the whole gain/loss type, whereas unfavorable cases who died of disease showed partial gain/loss, MYCN-amplified, or silent types.

Conclusions: Genomewide genetic analysis is useful to predict the outcome of patients. Although the cases whose tumors showed whole gain/loss may respond well to contemporary therapy, sparing intensive surgery, current therapeutic strategy may be insufficient for the subgroups with partial gain/loss, MYCN-amplified, or silent type. Validation of these results would provide new tools to predict clinical outcome of children with NB.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Child
  • Child, Preschool
  • Humans
  • Infant
  • Infant, Newborn
  • Mass Screening
  • Nervous System Neoplasms / diagnosis
  • Nervous System Neoplasms / genetics*
  • Neuroblastoma / diagnosis
  • Neuroblastoma / genetics*
  • Oligonucleotide Array Sequence Analysis*
  • Polymorphism, Single Nucleotide*
  • Survival Analysis
  • Treatment Outcome