Solution structure of the THAP domain from Caenorhabditis elegans C-terminal binding protein (CtBP)

J Mol Biol. 2007 Feb 16;366(2):382-90. doi: 10.1016/j.jmb.2006.11.058. Epub 2006 Nov 18.

Abstract

The THAP (Thanatos-associated protein) domain is a recently discovered zinc-binding domain found in proteins involved in transcriptional regulation, cell-cycle control, apoptosis and chromatin modification. It contains a single zinc atom ligated by cysteine and histidine residues within a Cys-X(2-4)-Cys-X(35-53)-Cys-X(2)-His consensus. We have determined the NMR solution structure of the THAP domain from Caenorhabditis elegans C-terminal binding protein (CtBP) and show that it adopts a fold containing a treble clef motif, bearing similarity to the zinc finger-associated domain (ZAD) from Drosophila Grauzone. The CtBP THAP domain contains a large, positively charged surface patch and we demonstrate that this domain can bind to double-stranded DNA in an electrophoretic mobility-shift assay. These data, together with existing reports, indicate that THAP domains might exhibit a functional diversity similar to that observed for classical and GATA-type zinc fingers.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcohol Oxidoreductases / chemistry*
  • Alcohol Oxidoreductases / physiology
  • Amino Acid Motifs
  • Amino Acid Sequence
  • Animals
  • Caenorhabditis elegans Proteins / chemistry*
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / physiology
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Sequence Homology, Amino Acid
  • Solutions
  • Structure-Activity Relationship

Substances

  • Caenorhabditis elegans Proteins
  • DNA-Binding Proteins
  • Solutions
  • Alcohol Oxidoreductases
  • C-terminal binding protein

Associated data

  • PDB/2JM3