Interaction of immobilized human exportin-t with calf liver tRNA

RNA Biol. 2006 Oct;3(4):145-9. doi: 10.4161/rna.3.4.3679. Epub 2006 Oct 9.

Abstract

The binding of tRNA species from calf liver to immobilized exportin-t in the presence of ran x GppNHp was examined by affinity chromatography. We observed different eluting behaviors of individual tRNAs. After separating tRNAs on a two-dimensional polyacrylamide gel, the positions of seven selected tRNAs were identified by Northern hybridization and their relative affinities to immobilized exportin-t x ran x GppNHp complex were estimated in the order of tRNA(Leu)(CAG) > tRNA(Ser)(GCU), tRNA(Leu)(CAA), tRNA(Ser)(UGA) > tRNA(Ser)(AGA), tRNA(Leu)(AAG) > tRNA(Arg)(ACG). We propose that exportin-t preferentially binds and exports those tRNAs that are rapidly consumed by the protein synthesis machinery.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cattle
  • Chromatography, Affinity
  • Humans
  • Liver / metabolism*
  • Nucleocytoplasmic Transport Proteins / chemistry*
  • Nucleocytoplasmic Transport Proteins / genetics*
  • Nucleocytoplasmic Transport Proteins / metabolism
  • Protein Binding / genetics
  • RNA, Transfer / chemistry*
  • RNA, Transfer / genetics
  • RNA, Transfer / metabolism*

Substances

  • Nucleocytoplasmic Transport Proteins
  • XPOT protein, human
  • RNA, Transfer