Description of Shewanella glacialipiscicola sp. nov. and Shewanella algidipiscicola sp. nov., isolated from marine fish of the Danish Baltic Sea, and proposal that Shewanella affinis is a later heterotypic synonym of Shewanella colwelliana

Int J Syst Evol Microbiol. 2007 Feb;57(Pt 2):347-352. doi: 10.1099/ijs.0.64708-0.

Abstract

Two novel species belonging to the genus Shewanella are described on the basis of a polyphasic taxonomic approach. A total of 40 strains of Gram-negative, psychrotolerant, H2S-producing bacteria were isolated from marine fish (cod and plaice) caught in the Baltic Sea off Denmark. Strains belonging to group 1 (seven strains) were a lactate-assimilating variant of Shewanella morhuae with a G+C content of 44 mol%. The strains of group 2 (33 strains) utilized lactate, N-acetylglucosamine and malate but did not produce DNase or ornithine decarboxylase. Their G+C content was 47 mol%. Phylogenetic analysis of the 16S rRNA gene sequence data placed the two novel species within the genus Shewanella. Group 1 showed greatest sequence similarity with S. morhuae ATCC BAA-1205T (99.9 %). However, gyrB gene sequence analysis and DNA-DNA hybridization differentiated these isolates from S. morhuae, with 95.6 % sequence similarity and less than 57 % DNA relatedness, respectively. Group 2 strains shared more than 99 % 16S rRNA gene sequence similarity with the type strains of Shewanella colwelliana and Shewanella affinis, but gyrB sequence similarity ( approximately 85 %) and the results of DNA hybridization ( approximately 28 %) indicated that the new isolates represented a novel species. Furthermore, when compared to each other, the type strains of S. colwelliana and S. affinis had almost identical gyrB sequences and significantly high DNA reassociation values (76-83 %), indicating that they belonged to the same species. Based on the conclusions of this study, we propose the novel species Shewanella glacialipiscicola sp. nov. (type strain T147T=LMG 23744T=NBRC 102030T) for group 1 strains and Shewanella algidipiscicola sp. nov. (type strain S13T=LMG 23746T=NBRC 102032T) for group 2 strains, and we propose that Shewanella affinis as a later heterotypic synonym of Shewanella colwelliana.

MeSH terms

  • Acetylglucosamine / metabolism
  • Animals
  • Bacterial Typing Techniques
  • Base Composition
  • DNA Gyrase / genetics
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Denmark
  • Fishes / microbiology*
  • Genes, rRNA
  • Hydrogen Sulfide / metabolism
  • Lactic Acid / metabolism
  • Malates / metabolism
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Shewanella / classification*
  • Shewanella / cytology
  • Shewanella / isolation & purification*
  • Shewanella / physiology

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Malates
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Lactic Acid
  • malic acid
  • DNA Gyrase
  • Acetylglucosamine
  • Hydrogen Sulfide

Associated data

  • GENBANK/AB205568
  • GENBANK/AB205569
  • GENBANK/AB205570
  • GENBANK/AB205571
  • GENBANK/AB205574
  • GENBANK/AB205577
  • GENBANK/AB266200
  • GENBANK/AB266201
  • GENBANK/AB266202
  • GENBANK/AB266203
  • GENBANK/AB266204
  • GENBANK/AB266205