Cyanobacteria produce toxins that may contaminate drinking water sources. Among others, the presence of the alkaloid toxins cylindrospermopsin (CYN) and anatoxin-a (ANTX) constitutes a considerable threat to human health due to the acute and chronic toxicity of these compounds. In the present study, not previously reported second-order rate constants for the reactions of CYN and ANTX with chlorine and monochloramine and of CYN with potassium permanganate were determined and the influence of pH and temperature was established for the most reactive cases. It was found that the reactivity of CYN with chlorine presents a maximum at pH 7 (rate constant of 1265 M(-1)s(-1)). However, the oxidation of CYN with chloramine and permanganate are rather slow processes, with rate constants <1 M(-1)s(-1). The first chlorination product of CYN was found to be 5-chloro-CYN (5-Cl-CYN), which reacts with chlorine 10-20 times slower than the parent compound. The reactivity of ANTX with chlorine and chloramines is also very low (k<1M(-1)s(-1)). The elimination of CYN and ANTX in surface water was also investigated. A chlorine dose of 1.5 mg l(-1) was enough to oxidize CYN almost completely. However, 3 mg l(-1) of chlorine was able to remove only 8% of ANTX, leading to a total formation of trihalomethanes (TTHM) at a concentration of 150 microg l(-1). Therefore, chlorination is a feasible option for CYN degradation during oxidation and disinfection processes but not for ANTX removal. The permanganate dose required for CYN oxidation is very high and not applicable in waterworks.