Molecular characterization of of alpha-gliadin genes from wild emmer wheat (Triticum dicoccoides)

DNA Seq. 2006 Dec;17(6):415-21. doi: 10.1080/10425170600931601.

Abstract

According to the two distal and conserved regions of known alpha-gliadin genes, gene-specific primers for alpha-gliadin were designed, and the coding regions of four gliadin genes (i.e. GliTd-1, GliTd-2, GliTd-3 and GliTd-4) with the length of about 800 bp were isolated from the genomic DNA of wild emmer wheat (Triticum dicoccoides). No introns were observed. Sequence comparison indicated that these genes should be classified as alpha-gliadins. GliTd-3 (GenBank accession No.DQ140351) and GliTd-4 (DQ140352) were potentially functional, whereas GliTd-1 (DQ140349) and GliTd-2 (DQ140350) were both pseudogenes by the definition of in-frame stop codons and frameshifts. Six conserved cysteine residues were observed. Sequence analysis suggested that the motif units of repetitive domain for the four newly detected genes were different from the known genes, and the QQQP sequence before the position 60 was more toxic to coeliac patients. Codons for proline were strongly biased. Codons (CAG and CAA) for glutamine were clustered into the specific regions, and the high percentage of pseudogenes resulted from the mutation of CAG --> TAG.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Codon / genetics
  • DNA Primers
  • Gene Components
  • Gliadin / genetics*
  • Molecular Sequence Data
  • Pseudogenes / genetics
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Triticum / genetics*

Substances

  • Codon
  • DNA Primers
  • Gliadin

Associated data

  • GENBANK/DQ140349
  • GENBANK/DQ140350
  • GENBANK/DQ140351
  • GENBANK/DQ140352