Trans-splicing of the Ll.LtrB group II intron in Lactococcus lactis

Nucleic Acids Res. 2007;35(7):2257-68. doi: 10.1093/nar/gkl1146. Epub 2007 Mar 27.

Abstract

The Ll.LtrB intron from the Gram-positive bacterium Lactococcus lactis is one of the most studied bacterial group II introns. Ll.LtrB interrupts the relaxase gene of three L. lactis conjugative elements. The relaxase enzyme recognizes the origin of transfer (oriT ) and initiates the intercellular transfer of its conjugative element. The splicing efficiency of Ll.LtrB from the relaxase transcript thus controls the conjugation level of its host element. Here, we used the level of sex factor conjugation as a read-out for Ll.LtrB splicing efficiency. Using this highly sensitive splicing/conjugation assay (10(7)-fold detection range), we demonstrate that Ll.LtrB can trans-splice in L. lactis when fragmented at various positions such as: three different locations within domain IV, within domain I and within domain III. We also demonstrate that the intron-encoded protein, LtrA, is absolutely required for Ll.LtrB trans-splicing. Characteristic Y-branched trans-spliced introns and ligated exons are detected by RT-PCR from total RNA extracts of cells harbouring fragmented Ll.LtrB. The splicing/conjugation assay we developed constitutes the first model system to study group II intron trans-splicing in vivo. Although only previously observed in bacterial-derived organelles, we demonstrate that assembly and trans-splicing of a fragmented group II intron can take place efficiently in bacterial cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / physiology
  • Conjugation, Genetic
  • Exons
  • Introns*
  • Lactococcus lactis / genetics*
  • Nucleic Acid Conformation
  • RNA, Catalytic / chemistry
  • RNA, Catalytic / metabolism
  • RNA-Directed DNA Polymerase / physiology
  • Reverse Transcriptase Polymerase Chain Reaction
  • Trans-Splicing*

Substances

  • Bacterial Proteins
  • RNA, Catalytic
  • LtrA protein, Lactococcus lactis
  • RNA-Directed DNA Polymerase