Structure of an atypical orphan response regulator protein supports a new phosphorylation-independent regulatory mechanism

J Biol Chem. 2007 Jul 13;282(28):20667-75. doi: 10.1074/jbc.M609104200. Epub 2007 May 9.

Abstract

Two-component signal transduction systems, commonly found in prokaryotes, typically regulate cellular functions in response to environmental conditions through a phosphorylation-dependent process. A new type of response regulator, hp1043 (HP-RR) from Helicobacter pylori, has been recently identified. HP-RR is essential for cell growth and does not require the well known phosphorelay scheme. Unphosphorylated HP-RR binds specifically to its own promoter (P(1043)) and autoregulates the promoter of the tlpB gene (P(tlpB)). We have determined the structure of HP-RR by NMR and x-ray crystallography, revealing a symmetrical dimer with two functional domains. The molecular topology resembles that of the OmpR/PhoB subfamily, however, the symmetrical dimer is stable even in the unphosphorylated state. The dimer interface, formed by three secondary structure elements (alpha4-beta5-alpha5), resembles that of the active, phosphorylated forms of ArcA and PhoB. Several conserved residues of the HP-RR dimeric interface deviate from the OmpR/PhoB subfamily, although there are similar salt bridges and hydrophobic patches within the interface. Our findings reveal how a new type of response regulator protein could function as a cell growth-associated regulator in the absence of post-translational modification.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallography, X-Ray
  • DNA, Bacterial / chemistry*
  • DNA, Bacterial / metabolism
  • Dimerization
  • Gene Expression Regulation, Bacterial / physiology
  • Helicobacter pylori / chemistry*
  • Helicobacter pylori / metabolism
  • Models, Molecular*
  • Nuclear Magnetic Resonance, Biomolecular
  • Phosphorylation
  • Promoter Regions, Genetic / physiology
  • Protein Binding / physiology
  • Protein Processing, Post-Translational*
  • Protein Structure, Quaternary
  • Protein Structure, Secondary
  • Transcription Factors / chemistry*
  • Transcription Factors / metabolism

Substances

  • DNA, Bacterial
  • HP1043 protein, Helicobacter pylori
  • Transcription Factors

Associated data

  • PDB/2HQN
  • PDB/2HQO
  • PDB/2HQR
  • PDB/2PLN