Discovery of inhibitors of the pentein superfamily protein dimethylarginine dimethylaminohydrolase (DDAH), by virtual screening and hit analysis

Bioorg Med Chem Lett. 2007 Jul 15;17(14):3953-6. doi: 10.1016/j.bmcl.2007.04.095. Epub 2007 May 3.

Abstract

An efficient process for the discovery of inhibitors of DDAH enzymes, without the requirement for high throughput screening, is described. Physicochemical filtering of a 308,000-compound library according to drug likeness followed by reciprocal nearest neighbour selection produced a representative subset of 35,000 compounds. Virtual screening on a dual processor PC using FlexX, followed by biological screening, identified two hit series. Similarity searches of commercial databases and chemical re-synthesis of pure compounds resulted in SR445 as an inhibitor of Pseudomonas aeruginosa DDAH at 2 microM.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amidohydrolases / antagonists & inhibitors*
  • Enzyme Inhibitors / pharmacology*
  • Models, Molecular
  • Pseudomonas aeruginosa / enzymology*

Substances

  • Enzyme Inhibitors
  • Amidohydrolases
  • dimethylargininase