Synthesis of oligo-RNAs with photocaged adenosine 2'-hydroxyls

Nat Protoc. 2007;2(5):1052-8. doi: 10.1038/nprot.2007.154.

Abstract

This protocol describes a general method for the preparation of RNAs in which the reactivity or hydrogen-bonding properties of the molecule are modified in a photoreversible fashion by use of a caging strategy. A single caged adenosine, modified at the 2' position as a nitro-benzyl ether, can be incorporated into short RNAs by chemical synthesis or into long RNAs by a combination of chemical and enzymatic synthesis. The modified RNAs can be uncaged by photolysis under a variety of conditions including the use of a laser or xenon lamp, and the course of this uncaging reaction may be readily followed by HPLC or thin-layer chromatography.

MeSH terms

  • Adenosine / chemistry
  • Chemistry, Physical / methods*
  • Chromatography, High Pressure Liquid
  • Hydrogen Bonding
  • Hydroxides / chemistry
  • Photolysis
  • RNA / chemical synthesis*
  • RNA / chemistry*

Substances

  • Hydroxides
  • RNA
  • hydroxide ion
  • Adenosine