Dyadobacter koreensis sp. nov., isolated from fresh water

Int J Syst Evol Microbiol. 2007 Jun;57(Pt 6):1227-1231. doi: 10.1099/ijs.0.64902-0.

Abstract

A non-motile, rod-shaped, light-yellow-pigmented bacterium, designated strain WPCB159(T), was isolated from freshwater samples collected from the Woopo wetland in Korea. The cells were Gram-negative, aerobic and catalase- and oxidase-positive. The major fatty acids were C(16 : 1)omega7c (34.8 %), iso-C(15 : 0) (24.2 %) and C(16 : 0) (9.4 %). The DNA G+C content was 44 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain WPCB159(T) forms a lineage within the genus Dyadobacter (family 'Flexibacteraceae') and is closely related to Dyadobacter hamtensis HHS 11(T) (97.8 % sequence similarity) and to other members of the genus Dyadobacter (95.2-96.8 % sequence similarity). The phenotypic characteristics and DNA-DNA hybridization relatedness data indicate that strain WPCB159(T) should be distinguished from D. hamtensis HHS 11(T). On the basis of the evidence presented in this study, strain WPCB159(T) represents a novel species of the genus Dyadobacter, for which the name Dyadobacter koreensis sp. nov. is proposed. The type strain is WPCB159(T) (=KCTC 12537(T)=NBRC 101116(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aerobiosis
  • Bacterial Typing Techniques
  • Base Composition
  • Catalase / analysis
  • Cytophagaceae / classification*
  • Cytophagaceae / isolation & purification*
  • Cytophagaceae / physiology
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Fresh Water / microbiology*
  • Genes, rRNA
  • Korea
  • Locomotion
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oxidoreductases / analysis
  • Phylogeny
  • Pigments, Biological / biosynthesis
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Pigments, Biological
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Oxidoreductases
  • Catalase

Associated data

  • GDB/EF017660