Interaction between the DNA model base 9-ethylguanine and a group of ruthenium polypyridyl complexes: kinetics and conformational temperature dependence

Inorg Chem. 2007 Aug 6;46(16):6715-22. doi: 10.1021/ic070092u. Epub 2007 Jul 6.

Abstract

The binding capability of three ruthenium polypyridyl compounds of structural formula [Ru(apy)(tpy)Ln-](ClO4)(2-n) [1a-c; apy = 2,2'-azobis(pyridine), tpy = 2,2':6',2''-terpyridine, L = Cl, H2O, CH3CN] to a fragment of DNA was studied. The interaction between each of these complexes and the DNA model base 9-ethylguanine (9-EtGua) was followed by means of 1H NMR studies. Density functional theory calculations were carried out to explore the preferential ways of coordination between the ruthenium complexes and guanine. The ruthenium-9-EtGua adduct formed was isolated and fully characterized using different techniques. A variable-temperature 1H NMR experiment was carried out that showed that while the 9-EtGua fragment was rotating fast at high temperature, a loss of symmetry was suffered by the model base adduct as the temperature was lowered, indicating restricted rotation of the guanine residue.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chemistry / methods
  • Crystallography, X-Ray
  • DNA / chemistry*
  • Guanine / analogs & derivatives*
  • Guanine / chemistry
  • Kinetics
  • Magnetic Resonance Spectroscopy / methods
  • Models, Chemical
  • Models, Molecular
  • Molecular Conformation
  • Pyridines / chemistry*
  • Ruthenium / chemistry*
  • Software
  • Temperature
  • Time Factors

Substances

  • Pyridines
  • Guanine
  • Ruthenium
  • 9-ethylguanine
  • DNA