African scientists need more bioinformatics training in order to make innovative contributions to global biotechnology. To address the bioinformatics skills gap in West Africa, various training initiatives have been established in the sub-region. We present the activities of the West African Biotechnology Workshops (http://www.wabw.org/) in the past three years, and report on a symposium on bioinformatics and applied genomics in West Africa. To establish and sustain regional and national networks, stronger and increased government commitment by way of financial and infrastructural support for bioinformatics capacity building in West Africa is required.