In silico comparison of pKLC102-like genomic islands of Pseudomonas aeruginosa

FEMS Microbiol Lett. 2007 Oct;275(2):244-9. doi: 10.1111/j.1574-6968.2007.00891.x. Epub 2007 Aug 22.

Abstract

The genomic island pKLC102 first detected in Pseudomonas aeruginosa clone C strains can cross species barriers and exhibits the highest mobilization rate of a genomic island known to date. Homologous genomic islands of 81-108 kb in size were identified in the completely sequenced P. aeruginosa strains PA7, PA14, 2192, C3719 and PACS2, but not in strains PAO1 and LES. All pKLC102-like genomic islands are integrated in chromosomal tRNA(Lys) genes and share a syntenic set of more than 70 homologous ORFs, part of which are related to DNA replication or mobility genes. The conserved backbone has predilection sites for the uptake of island-specific gene cassettes. A major difference between the islands is the organization of the origin of replication oriV.

Publication types

  • Comparative Study

MeSH terms

  • Bacterial Proteins / genetics
  • Base Sequence
  • Computational Biology / methods*
  • Gene Transfer, Horizontal
  • Genome, Bacterial*
  • Genomic Islands / genetics*
  • Molecular Sequence Data
  • Oligonucleotide Array Sequence Analysis
  • Open Reading Frames
  • Plasmids
  • Polymorphism, Single Nucleotide / genetics
  • Pseudomonas aeruginosa / classification*
  • Pseudomonas aeruginosa / genetics*
  • RNA, Transfer, Lys
  • Replication Origin
  • Sequence Homology, Nucleic Acid*
  • Species Specificity

Substances

  • Bacterial Proteins
  • RNA, Transfer, Lys