Devosia subaequoris sp. nov., isolated from beach sediment

Int J Syst Evol Microbiol. 2007 Oct;57(Pt 10):2212-2215. doi: 10.1099/ijs.0.65185-0.

Abstract

A novel marine bacterium was isolated from a sediment sample from Hwasun Beach in Jeju, Republic of Korea. The cells were found to be Gram-negative, aerobic, oxidase-positive, catalase-positive, motile rods. The organism required natural seawater or artificial sea salts for growth. The temperature and pH ranges for growth were 20-42 degrees C and pH 5.1-12.1, respectively. Phylogenetic analyses based on 16S rRNA gene sequences showed that the organism belonged to the order Rhizobiales and formed a robust cluster with members of the genus Devosia. Its phylogenetic neighbours were the type strains of Devosia riboflavina (96.8 % 16S rRNA gene sequence similarity), Devosia neptuniae (96.7 %), Devosia soli (96.5 %) and Devosia limi (96.2 %), 'Devosia terrae' DCY11 (96.2 %) and 'Candidatus Devosia euplotis' (96.2 %). The predominant ubiquinone was Q-10, the major fatty acids were C(18 : 1), C(18 : 0) and C(16 : 0) and the G+C content of the DNA was 59.1 mol%. On the basis of phenotypic data and the results of phylogenetic analyses, strain HST3-14(T) represents a novel species of the genus Devosia, for which the name Devosia subaequoris sp. nov. is proposed. The type strain is strain HST3-14(T) (=KCTC 12772(T) =JCM 14206(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aerobiosis / physiology
  • Bacterial Typing Techniques
  • Base Composition
  • Catalase / metabolism
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Genes, rRNA
  • Geologic Sediments / microbiology*
  • Hydrogen-Ion Concentration
  • Hyphomicrobiaceae / classification*
  • Hyphomicrobiaceae / genetics
  • Hyphomicrobiaceae / isolation & purification*
  • Hyphomicrobiaceae / physiology
  • Korea
  • Locomotion / physiology
  • Molecular Sequence Data
  • Oxidoreductases / metabolism
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Temperature
  • Ubiquinone / analysis

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Ubiquinone
  • Oxidoreductases
  • Catalase

Associated data

  • GENBANK/AM293857