Reaction mechanism of the vitamin K-dependent glutamate carboxylase: a computational study

J Phys Chem B. 2007 Nov 8;111(44):12883-7. doi: 10.1021/jp0738208. Epub 2007 Oct 13.

Abstract

In the reaction cycle of glutamate carboxylase, vitamin K epoxidation by O2 has been proposed to generate a very strong base able to remove a proton from the gamma carbon of a Glu residue, thus yielding a Glu-based carbanion that readily reacts with CO2. We have used hybrid density functional theory to study this appealing mechanism. Our calculations show a very exergonic four-step mechanism with the reaction of (triplet) O2 with the singlet vitamin K anion as the rate-limiting step, with a rate similar to the experimental value. Our study also establishes the need to apply continuum models when performing the optimization of minimum-energy crossing points between potential energy surfaces of different multiplicities for enzyme model systems.

MeSH terms

  • Anions / chemistry
  • Carbon-Carbon Ligases / chemistry*
  • Computer Simulation*
  • Enzyme Activation
  • Glutamic Acid / chemistry*
  • Models, Chemical*
  • Molecular Structure
  • Oxygen / chemistry

Substances

  • Anions
  • Glutamic Acid
  • Carbon-Carbon Ligases
  • glutamyl carboxylase
  • Oxygen