Ganoderma lucidum polysaccharides in human monocytic leukemia cells: from gene expression to network construction

BMC Genomics. 2007 Nov 9:8:411. doi: 10.1186/1471-2164-8-411.

Abstract

Background: Ganoderma lucidum has been widely used as a herbal medicine for promoting health and longevity in China and other Asian countries. Polysaccharide extracts from Ganoderma lucidum have been reported to exhibit immuno-modulating and anti-tumor activities. In previous studies, F3, the active component of the polysaccharide extract, was found to activate various cytokines such as IL-1, IL-6, IL-12, and TNF-alpha. This gave rise to our investigation on how F3 stimulates immuno-modulating or anti-tumor effects in human leukemia THP-1 cells.

Results: Here, we integrated time-course DNA microarray analysis, quantitative PCR assays, and bioinformatics methods to study the F3-induced effects in THP-1 cells. Significantly disturbed pathways induced by F3 were identified with statistical analysis on microarray data. The apoptosis induction through the DR3 and DR4/5 death receptors was found to be one of the most significant pathways and play a key role in THP-1 cells after F3 treatment. Based on time-course gene expression measurements of the identified pathway, we reconstructed a plausible regulatory network of the involved genes using reverse-engineering computational approach.

Conclusion: Our results showed that F3 may induce death receptor ligands to initiate signaling via receptor oligomerization, recruitment of specialized adaptor proteins and activation of caspase cascades.

MeSH terms

  • Apoptosis / drug effects*
  • Apoptosis / genetics
  • Apoptosis / physiology
  • Blotting, Western
  • Cell Line, Tumor
  • Cytokines / genetics
  • Cytokines / metabolism
  • Drugs, Chinese Herbal / chemistry
  • Drugs, Chinese Herbal / pharmacology*
  • Enzyme-Linked Immunosorbent Assay
  • Gene Expression Profiling
  • Humans
  • Leukemia, Monocytic, Acute / genetics
  • Leukemia, Monocytic, Acute / metabolism
  • Leukemia, Monocytic, Acute / pathology
  • Oligonucleotide Array Sequence Analysis
  • Plant Extracts / chemistry
  • Plant Extracts / pharmacology
  • Polymerase Chain Reaction
  • Polysaccharides / chemistry
  • Polysaccharides / pharmacology*
  • Receptors, Death Domain / genetics
  • Receptors, Death Domain / metabolism
  • Reishi / chemistry*
  • Signal Transduction / drug effects
  • Signal Transduction / genetics
  • Signal Transduction / physiology

Substances

  • Cytokines
  • Drugs, Chinese Herbal
  • Plant Extracts
  • Polysaccharides
  • Receptors, Death Domain