Purification and characterization of a novel beta-agarase, AgaA34, from Agarivorans albus YKW-34

Appl Microbiol Biotechnol. 2008 Feb;78(2):265-73. doi: 10.1007/s00253-007-1303-3. Epub 2007 Dec 11.

Abstract

An extracellular beta-agarase (AgaA34) was purified from a newly isolated marine bacterium, Agarivorans albus YKW-34 from the gut of a turban shell. AgaA34 was purified to homogeneity by ion exchange and gel filtration chromatographies with a recovery of 30% and a fold of ten. AgaA34 was composed of a single polypeptide chain with the molecular mass of 50 kDa. N-terminal amino acid sequencing revealed a sequence of ASLVTSFEEA, which exhibited a high similarity (90%) with those of agarases from glycoside hydrolase family 50. The pH and temperature optima of AgaA34 were pH 8.0 and 40 degrees C, respectively. It was stable over pH 6.0-11.0 and at temperature up to 50 degrees C. Hydrolysis of agarose by AgaA34 produced neoagarobiose (75 mol%) and neoagarotetraose (25 mol%), whose structures were identified by matrix-assisted laser desorption ionization time-of-flight mass spectroscopy and (13)C NMR. AgaA34 cleaved both neoagarohexaose and neoagarotetraose into neoagarobiose. The k (cat)/K (m) values for hydrolysis agarose and neoagarotetraose were 4.04 x 10(3) and 8.1 x 10(2) s(-1) M(-1), respectively. AgaA34 was resistant to denaturing reagents (sodium dodecyl sulfate and urea). Metal ions were not required for its activity, while reducing reagents (beta-Me and dithiothreitol, DTT) increased its activity by 30%.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alteromonadaceae / enzymology*
  • Animals
  • Chromatography, Gel
  • Chromatography, Ion Exchange
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Disaccharides / metabolism
  • Dithiothreitol / pharmacology
  • Enzyme Activators / pharmacology
  • Enzyme Inhibitors / pharmacology
  • Enzyme Stability
  • Galactosides / metabolism
  • Gastropoda / microbiology
  • Glycoside Hydrolases / chemistry
  • Glycoside Hydrolases / genetics*
  • Glycoside Hydrolases / isolation & purification
  • Glycoside Hydrolases / metabolism*
  • Hydrogen-Ion Concentration
  • Kinetics
  • Magnetic Resonance Spectroscopy
  • Mercaptoethanol / pharmacology
  • Molecular Sequence Data
  • Molecular Weight
  • Oligosaccharides / metabolism
  • Sepharose / metabolism
  • Sequence Analysis, DNA
  • Sequence Analysis, Protein
  • Sequence Homology, Amino Acid
  • Sodium Dodecyl Sulfate / pharmacology
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • Temperature
  • Urea / pharmacology

Substances

  • DNA, Bacterial
  • Disaccharides
  • Enzyme Activators
  • Enzyme Inhibitors
  • Galactosides
  • Oligosaccharides
  • neoagarotetraose
  • Sodium Dodecyl Sulfate
  • neoagarobiose
  • Mercaptoethanol
  • Urea
  • Sepharose
  • Glycoside Hydrolases
  • agarase
  • Dithiothreitol

Associated data

  • GENBANK/EU084496