Identification of new genetic subtypes of bovine viral diarrhea virus genotype 1 isolated in Japan

Virus Genes. 2008 Feb;36(1):135-9. doi: 10.1007/s11262-007-0190-0. Epub 2008 Jan 8.

Abstract

A part of the nucleotide sequence of the 5' untranslated region (5'UTR) and E rns region, and the genomic regions encoding for N pro, Core, and E2 of So-like isolates and IS25CP/01 strain which belong to bovine viral diarrhea virus genotype 1 (BVDV-1) were determined and genetic comparisons were made with sequences of other BVDV subgenotypes. Phylogenetic analysis using the 5'UTR and N pro revealed that So-like isolates and IS25CP/01 branched into independent phylogenetic branch. So-like isolates were clustered with Korean BVDV strains taken from DDBL/EMBL/GenBank in the 5'UTR. An additional two amino acid residues were found at the C terminal of the Core region of IS25CP/01. The similarity of amino acid sequence of E2 of So-like isolates and IS25CP/01 to the BVDV-1 reference strain NADL were 78.0-78.5 and 79.0, respectively. Cross-neutralization tests showed significant antigenic differences between So-like isolates and the others (Antigenic similarity (R) value: 2.2-8.8), and IS25CP/01 and the others (R value: 1.6-8.8). So-like viruses and IS25CP/01 differed from the thirteenth subgenotypes (1a-1m) reported by Jackova et al. (2007) and were classified as new genetic subtypes, BVDV-1n (So-like) and 1o (IS25CP/01).

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Bovine Virus Diarrhea-Mucosal Disease / epidemiology*
  • Bovine Virus Diarrhea-Mucosal Disease / virology
  • Cattle
  • Diarrhea Virus 1, Bovine Viral / classification
  • Diarrhea Virus 1, Bovine Viral / genetics*
  • Diarrhea Virus 1, Bovine Viral / immunology
  • Diarrhea Virus 1, Bovine Viral / isolation & purification
  • Genetic Variation
  • Genotype
  • Japan / epidemiology
  • Molecular Sequence Data
  • Neutralization Tests
  • Phylogeny
  • Sequence Alignment

Associated data

  • GENBANK/AB359923
  • GENBANK/AB359924
  • GENBANK/AB359925
  • GENBANK/AB359926
  • GENBANK/AB359927
  • GENBANK/AB359928
  • GENBANK/AB359929
  • GENBANK/AB359930
  • GENBANK/AB359931
  • GENBANK/AB359932
  • GENBANK/AB359933
  • GENBANK/AB359934
  • GENBANK/AB359935
  • GENBANK/AB359936
  • GENBANK/AB359937
  • GENBANK/AB359938
  • GENBANK/AB359939
  • GENBANK/AB359940
  • GENBANK/AB359941
  • GENBANK/AB359942
  • GENBANK/AB359943
  • GENBANK/AB359944