Nonnative helical motif in a chaperone-bound protein fragment

Biophys J. 2008 Apr 1;94(7):L48-50. doi: 10.1529/biophysj.107.127647. Epub 2008 Jan 11.

Abstract

The effect of cotranslationally active chaperones on the conformation of incomplete protein chains is poorly understood. The secondary structure of a 77-residue chaperone-bound N-terminal protein fragment corresponding to the first five helices (A-E) of apomyoglobin (apoMb(1-77)) is investigated here at the residue-specific level by multidimensional NMR. The substrate-binding domain of DnaK, DnaK-beta, is employed as a chaperone model. By taking advantage of the improved spectral quality resulting from chaperone deuteration, we find that DnaK-beta-bound apoMb(1-77) displays a region of nonnative helicity at residues away from the main chaperone binding site. The nonnative structural motif comprises portions of the native D and E helices and has similar characteristics to the reported nonnative DE helical region of acid-unfolded full-length apoMb. Upon incorporation of the missing C-terminal amino acids, a structural kink develops between residues 56 and 57, and two separate native D and E helices are generated. This work highlights, for the first time to our knowledge, the presence of a nonnative helical motif in a large chaperone-bound protein fragment under physiologically relevant solution conditions.

Publication types

  • Letter
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Motifs
  • Apoproteins / chemistry*
  • Apoproteins / ultrastructure*
  • Models, Chemical*
  • Models, Molecular*
  • Myoglobin / chemistry*
  • Myoglobin / ultrastructure*
  • Protein Conformation

Substances

  • Apoproteins
  • Myoglobin
  • apomyoglobin