Crystal structures of the Streptomyces coelicolor TetR-like protein ActR alone and in complex with actinorhodin or the actinorhodin biosynthetic precursor (S)-DNPA

J Mol Biol. 2008 Mar 7;376(5):1377-87. doi: 10.1016/j.jmb.2007.12.061. Epub 2008 Jan 4.

Abstract

Actinorhodin, an antibiotic produced by Streptomyces coelicolor, is exported from the cell by the ActA efflux pump. actA is divergently transcribed from actR, which encodes a TetR-like transcriptional repressor. We showed previously that ActR represses transcription by binding to an operator from the actA/actR intergenic region. Importantly, actinorhodin itself or various actinorhodin biosynthetic intermediates can cause ActR to dissociate from its operator, leading to derepression. This suggests that ActR may mediate timely self-resistance to an endogenously produced antibiotic by responding to one of its biosynthetic precursors. Here, we report the structural basis for this precursor-mediated derepression with crystal structures of homodimeric ActR by itself and in complex with either actinorhodin or the actinorhodin biosynthetic intermediate (S)-DNPA [4-dihydro-9-hydroxy-1-methyl-10-oxo-3-H-naphtho-[2,3-c]-pyran-3-(S)-acetic acid]. The ligand-binding tunnel in each ActR monomer has a striking hydrophilic/hydrophobic/hydrophilic arrangement of surface residues that accommodate either one hexacyclic actinorhodin molecule or two back-to-back tricyclic (S)-DNPA molecules. Moreover, our work also reveals the strongest structural evidence to date that TetR-mediated antibiotic resistance may have been acquired from an antibiotic-producer organism.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anthraquinones / metabolism
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism*
  • Crystallography, X-Ray
  • Models, Molecular
  • Naphthalenes / metabolism*
  • Protein Binding
  • Protein Conformation
  • Pyrans / metabolism*
  • Streptomyces coelicolor / chemistry*

Substances

  • 4-dihydro-9-hydroxy-1-methyl-10-oxo-3-H-naphtho-(2,3-c)-pyran-3-acetic acid
  • Anthraquinones
  • Bacterial Proteins
  • Naphthalenes
  • Pyrans
  • actinorhodin

Associated data

  • PDB/2OPT
  • PDB/3B6A
  • PDB/3B6C