Suppressors of a U4 snRNA mutation define a novel U6 snRNP protein with RNA-binding motifs

Genes Dev. 1991 May;5(5):773-85. doi: 10.1101/gad.5.5.773.

Abstract

U4 and U6 small nuclear RNAs are associated by an extensive base-pairing interaction that must be disrupted and reformed with each round of splicing. U4 mutations within the U4/U6 interaction domain destabilize the complex in vitro and cause a cold-sensitive phenotype in vivo. Restabilization of the U4/U6 helix by dominant (gain-of-function), compensatory mutations in U6 results in wild-type growth. Cold-insensitive growth can also be restored by two classes of recessive (loss-of-function) suppressors: (1) mutations in PRP24, which we show to be a U6-specific binding protein of the RNP-consensus family; and (2) mutations in U6, which lie outside the interaction domain and identify putative PRP24-binding sites. Destabilization of the U4/U6 helix causes the accumulation of a PRP24/U4/U6 complex, which is undetectable in wild-type cells. The loss-of-function suppressor mutations inhibit the binding of PRP24 to U6, and thus presumably promote the release of PRP24 from the PRP24/U4/U6 complex and the reformation of the base-paired U4/U6 snRNP. We propose that the PRP24/U4/U6 complex is normally a highly transient intermediate in the spliceosome cycle and that PRP24 promotes the reannealing of U6 with U4.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Carrier Proteins / genetics*
  • Carrier Proteins / metabolism
  • Consensus Sequence
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Phenotype
  • Precipitin Tests
  • RNA Splicing
  • RNA, Fungal / genetics*
  • RNA, Fungal / metabolism
  • RNA, Small Nuclear / genetics*
  • RNA-Binding Proteins
  • Ribonucleoproteins / genetics*
  • Ribonucleoproteins / metabolism
  • Ribonucleoproteins, Small Nuclear
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / growth & development
  • Saccharomyces cerevisiae Proteins*
  • Sequence Alignment
  • Suppression, Genetic*

Substances

  • Carrier Proteins
  • Fungal Proteins
  • Prp24 protein, S cerevisiae
  • RNA, Fungal
  • RNA, Small Nuclear
  • RNA-Binding Proteins
  • Ribonucleoproteins
  • Ribonucleoproteins, Small Nuclear
  • Saccharomyces cerevisiae Proteins