RNA secondary structure analysis using the Vienna RNA package

Curr Protoc Bioinformatics. 2004 Feb;Chapter 12:Unit 12.2. doi: 10.1002/0471250953.bi1202s04.


This Current Protocols in Bioinformatics unit documents how to use the Vienna RNA package for RNA secondary structure analysis. Possible tasks include structure prediction for single sequences, prediction of consensus structures, and sequence design.

MeSH terms

  • Algorithms*
  • Base Sequence
  • Computer Simulation
  • Models, Chemical*
  • Models, Molecular*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • RNA / chemistry*
  • RNA / ultrastructure*
  • Sequence Analysis, RNA / methods*
  • Software*


  • RNA