tRNA integrity is a prerequisite for rapid CCA addition: implication for quality control

J Mol Biol. 2008 Jun 6;379(3):579-88. doi: 10.1016/j.jmb.2008.04.005. Epub 2008 Apr 8.

Abstract

CCA addition to the 3' end is an essential step in tRNA maturation. High-resolution crystal structures of the CCA enzymes reveal primary enzyme contact with the tRNA minihelix domain, consisting of the acceptor stem and T stem-loop. RNA and DNA minihelices are efficient substrates for CCA addition in steady-state kinetics. However, in contrast to structural models and steady-state experiments, we show here by single-turnover kinetics that minihelices are insufficient substrates for the Escherichia coli CCA enzyme and that only the full-length tRNA is kinetically competent. Even a nick in the full-length tRNA backbone in the T loop, or as far away from the minihelix domain as in the anticodon loop, prevents efficient CCA addition. These results suggest a kinetic quality control provided by the CCA enzyme to inspect the integrity of the tRNA molecule and to discriminate against nicked or damaged species from further maturation.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Base Sequence*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Macromolecular Substances
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation*
  • Protein Structure, Quaternary
  • RNA Nucleotidyltransferases / chemistry
  • RNA Nucleotidyltransferases / genetics
  • RNA Nucleotidyltransferases / metabolism*
  • RNA, Transfer / chemistry*
  • RNA, Transfer / metabolism

Substances

  • Escherichia coli Proteins
  • Macromolecular Substances
  • RNA, Transfer
  • RNA Nucleotidyltransferases
  • tRNA nucleotidyltransferase