Low-fidelity DNA synthesis by human DNA polymerase theta

Nucleic Acids Res. 2008 Jun;36(11):3847-56. doi: 10.1093/nar/gkn310. Epub 2008 May 24.

Abstract

Human DNA polymerase theta (pol or POLQ) is a proofreading-deficient family A enzyme implicated in translesion synthesis (TLS) and perhaps in somatic hypermutation (SHM) of immunoglobulin genes. These proposed functions and kinetic studies imply that pol may synthesize DNA with low fidelity. Here, we show that when copying undamaged DNA, pol generates single base errors at rates 10- to more than 100-fold higher than for other family A members. Pol adds single nucleotides to homopolymeric runs at particularly high rates, exceeding 1% in certain sequence contexts, and generates single base substitutions at an average rate of 2.4 x 10(-3), comparable to inaccurate family Y human pol kappa (5.8 x 10(-3)) also implicated in TLS. Like pol kappa, pol is processive, implying that it may be tightly regulated to avoid deleterious mutagenesis. Pol also generates certain base substitutions at high rates within sequence contexts similar to those inferred to be copied by pol during SHM of immunoglobulin genes in mice. Thus, pol is an exception among family A polymerases, and its low fidelity is consistent with its proposed roles in TLS and SHM.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / biosynthesis*
  • DNA / chemistry
  • DNA-Directed DNA Polymerase / metabolism*
  • Humans
  • Mutation
  • Nucleotides / analysis
  • Nucleotides / metabolism
  • Somatic Hypermutation, Immunoglobulin

Substances

  • Nucleotides
  • DNA
  • DNA polymerase theta
  • DNA-Directed DNA Polymerase