How a T cell receptor-like antibody recognizes major histocompatibility complex-bound peptide

J Biol Chem. 2008 Oct 24;283(43):29053-9. doi: 10.1074/jbc.M804996200. Epub 2008 Aug 14.

Abstract

We determined the crystal structures of the T cell receptor (TCR)-like antibody 25-D1.16 Fab fragment bound to a complex of SIINFEKL peptide from ovalbumin and the H-2K(b) molecule. Remarkably, this antibody directly "reads" the structure of the major histocompatibility complex (MHC)-bound peptide, employing the canonical diagonal binding mode utilized by most TCRs. This is in marked contrast with another TCR-like antibody, Hyb3, bound to melanoma peptide MAGE-A1 in association with HLA-A1 MHC class I. Hyb3 assumes a non-canonical orientation over its cognate peptide-MHC and appears to recognize a conformational epitope in which the MHC contribution is dominant. We conclude that TCR-like antibodies can recognize MHC-bound peptide via two different mechanisms: one is similar to that exploited by the preponderance of TCRs and the other requires a non-canonical antibody orientation over the peptide-MHC complex.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallography, X-Ray
  • Epitopes / chemistry
  • Immunoglobulin Fab Fragments / chemistry*
  • Major Histocompatibility Complex*
  • Models, Biological
  • Models, Molecular
  • Molecular Conformation
  • Peptides / chemistry*
  • Protein Conformation
  • Receptors, Antigen, T-Cell / immunology*
  • Receptors, Antigen, T-Cell / metabolism

Substances

  • Epitopes
  • Immunoglobulin Fab Fragments
  • Peptides
  • Receptors, Antigen, T-Cell

Associated data

  • PDB/3CVH
  • PDB/3CVI