Isolation of Sorangium cellulosum carrying epothilone gene clusters

J Microbiol Biotechnol. 2008 Aug;18(8):1416-22.

Abstract

Epothilone and its analogs are a potent new class of anticancer compounds produced by myxobacteria. Thus, in an effort to identify new myxobacterial strains producing epothilone and its analogs, cellulose-degrading myxobacteria were isolated from Korean soils, and 13 strains carrying epothilone biosynthetic gene homologs were screened using a polymerase chain reaction. A migration assay revealed that Sorangium cellulosum KYC3013, 3016, 3017, and 3018 all produced microtubule-stabilizing compounds, and an LCMS/ MS analysis showed that S. cellulosum KYC3013 synthesized epothilone A.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Cell Line, Tumor
  • Cell Movement / drug effects
  • Cellulose / metabolism
  • Chromatography, Liquid
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Epothilones / biosynthesis
  • Epothilones / genetics*
  • Humans
  • Microscopy, Interference
  • Molecular Sequence Data
  • Myxococcales / genetics*
  • Myxococcales / isolation & purification*
  • Myxococcales / metabolism
  • Phylogeny
  • Polymerase Chain Reaction
  • RNA, Ribosomal, 16S / chemistry
  • RNA, Ribosomal, 16S / genetics
  • Sequence Alignment
  • Soil Microbiology*
  • Tandem Mass Spectrometry
  • Tubulin Modulators / isolation & purification
  • Tubulin Modulators / metabolism
  • Tubulin Modulators / pharmacology

Substances

  • DNA, Bacterial
  • Epothilones
  • RNA, Ribosomal, 16S
  • Tubulin Modulators
  • Cellulose

Associated data

  • GENBANK/EU242515
  • GENBANK/EU242516
  • GENBANK/EU242517
  • GENBANK/EU242518
  • GENBANK/EU242519