Nocardioides salarius sp. nov., isolated from seawater enriched with zooplankton

Int J Syst Evol Microbiol. 2008 Sep;58(Pt 9):2056-64. doi: 10.1099/ijs.0.65569-0.

Abstract

A rod-shaped marine bacterium, designated CL-Z59(T), was isolated from seawater enriched with zooplankton. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain CL-Z59(T) belongs to the genus Nocardioides, the highest level of sequence similarity (99.2%) being found with respect to Nocardioides marinisabuli KCCM 42681(T). However, DNA-DNA hybridization experiments between strain CL-Z59(T) and N. marinisabuli KCCM 42681(T) revealed a mean relatedness value of 33%. Cells were Gram-positive, strictly aerobic and non-motile. Strain CL-Z59(T) grew optimally at pH 6-7 and 25-30 degrees C and at a NaCl concentration of 3%. The isolate was characterized chemotaxonomically as having LL-diaminopimelic acid in the cell wall. The major isoprenoid quinone was MK-8(H(4)) and the predominant cellular fatty acid was iso-C(16:0). The DNA G+C content was 73.3 mol%. On the basis of phylogenetic, genotypic and phenotypic data, strain CL-Z59(T) represents a novel species of the genus Nocardioides, for which the name Nocardioides salarius sp. nov. is proposed. The type strain is CL-Z59(T) (=KCCM 42320(T)=DSM 18239(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / genetics
  • Actinomycetales / isolation & purification*
  • Actinomycetales / physiology
  • Aerobiosis
  • Animals
  • Bacterial Typing Techniques
  • Base Composition
  • Cell Wall / chemistry
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Diaminopimelic Acid / analysis
  • Fatty Acids / analysis
  • Genes, rRNA
  • Hydrogen-Ion Concentration
  • Locomotion
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny
  • Quinones / analysis
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Sodium Chloride / metabolism
  • Temperature
  • Zooplankton / microbiology*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Quinones
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Sodium Chloride
  • Diaminopimelic Acid

Associated data

  • GENBANK/DQ401092