Sulphate removal induces a major conformational change in Leishmania mexicana pyruvate kinase in the crystalline state

J Mol Biol. 2008 Nov 14;383(3):615-26. doi: 10.1016/j.jmb.2008.08.037. Epub 2008 Aug 23.

Abstract

We report X-ray structures of pyruvate kinase from Leishmania mexicana (LmPYK) that are trapped in different conformations. These, together with the previously reported structure of LmPYK in its inactive (T-state) conformation, allow comparisons of three different conformers of the same species of pyruvate kinase (PYK). Four new site point mutants showing the effects of side-chain alteration at subunit interfaces are also enzymatically characterised. The LmPYK tetramer crystals grown with ammonium sulphate as precipitant adopt an active-like conformation, with sulphate ions at the active and effector sites. The sulphates occupy positions similar to those of the phosphates of ligands bound to active (R-state) and constitutively active (nonallosteric) PYKs from several species, and provide insight into the structural roles of the phosphates of the substrates and effectors. Crystal soaking in sulphate-free buffers was found to induce major conformational changes in the tetramer. In particular, the unwinding of the Aalpha6' helix and the inward hinge movement of the B domain are coupled with a significant widening (4 A) of the tetramer caused by lateral movement of the C domains. The two new LmPYK structures and the activity studies of site point mutations described in this article are consistent with a developing picture of allosteric activity in which localised changes in protein flexibility govern the distribution of conformer families adopted by the tetramer in its active and inactive states.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / chemistry
  • Allosteric Regulation
  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Crystallography, X-Ray
  • Enzyme Activation
  • Humans
  • Leishmania mexicana / enzymology*
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Point Mutation
  • Protein Structure, Quaternary*
  • Pyruvate Kinase / chemistry*
  • Pyruvate Kinase / genetics
  • Pyruvate Kinase / metabolism
  • Sulfates / chemistry*

Substances

  • Sulfates
  • Adenosine Triphosphate
  • Pyruvate Kinase

Associated data

  • PDB/3E0V
  • PDB/3E0W