Trapping and characterization of a reaction intermediate in carbapenem hydrolysis by B. cereus metallo-beta-lactamase

J Am Chem Soc. 2008 Nov 26;130(47):15852-63. doi: 10.1021/ja801169j.

Abstract

Metallo-beta-lactamases hydrolyze most beta-lactam antibiotics. The lack of a successful inhibitor for them is related to the previous failure to characterize a reaction intermediate with a clinically useful substrate. Stopped-flow experiments together with rapid freeze-quench EPR and Raman spectroscopies were used to characterize the reaction of Co(II)-BcII with imipenem. These studies show that Co(II)-BcII is able to hydrolyze imipenem in both the mono- and dinuclear forms. In contrast to the situation met for penicillin, the species that accumulates during turnover is an enzyme-intermediate adduct in which the beta-lactam bond has already been cleaved. This intermediate is a metal-bound anionic species with a novel resonant structure that is stabilized by the metal ion at the DCH or Zn2 site. This species has been characterized based on its spectroscopic features. This represents a novel, previously unforeseen intermediate that is related to the chemical nature of carbapenems, as confirmed by the finding of a similar intermediate for meropenem. Since carbapenems are the only substrates cleaved by B1, B2, and B3 lactamases, identification of this intermediate could be exploited as a first step toward the design of transition-state-based inhibitors for all three classes of metallo-beta-lactamases.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillus cereus / enzymology*
  • Carbapenems / chemistry*
  • Carbapenems / metabolism*
  • Cobalt / chemistry*
  • Cobalt / metabolism*
  • Electron Spin Resonance Spectroscopy
  • Hydrolysis
  • Kinetics
  • Models, Biological
  • Protein Structure, Tertiary
  • Spectrum Analysis, Raman
  • Stereoisomerism
  • beta-Lactamases / chemistry*
  • beta-Lactamases / metabolism*

Substances

  • Carbapenems
  • Cobalt
  • beta-Lactamases