DNAPlotter: Circular and Linear Interactive Genome Visualization

Bioinformatics. 2009 Jan 1;25(1):119-20. doi: 10.1093/bioinformatics/btn578. Epub 2008 Nov 5.

Abstract

DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages.

Availability: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computational Biology / methods*
  • Genome / genetics*
  • Salmonella typhi / genetics
  • Software*