Analysis of the Nucleotide Sequence of the Guinea Pig Cytomegalovirus (GPCMV) Genome

Virol J. 2008 Nov 12;5:139. doi: 10.1186/1743-422X-5-139.

Abstract

In this report we describe the genomic sequence of guinea pig cytomegalovirus (GPCMV) assembled from a tissue culture-derived bacterial artificial chromosome clone, plasmid clones of viral restriction fragments, and direct PCR sequencing of viral DNA. The GPCMV genome is 232,678 bp, excluding the terminal repeats, and has a GC content of 55%. A total of 105 open reading frames (ORFs) of > 100 amino acids with sequence and/or positional homology to other CMV ORFs were annotated. Positional and sequence homologs of human cytomegalovirus open reading frames UL23 through UL122 were identified. Homology with other cytomegaloviruses was most prominent in the central approximately 60% of the genome, with divergence of sequence and lack of conserved homologs at the respective genomic termini. Of interest, the GPCMV genome was found in many cases to bear stronger phylogenetic similarity to primate CMVs than to rodent CMVs. The sequence of GPCMV should facilitate vaccine and pathogenesis studies in this model of congenital CMV infection.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Base Composition
  • Base Sequence
  • Betaherpesvirinae / classification
  • Betaherpesvirinae / genetics
  • Genome, Viral*
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • Roseolovirus / chemistry
  • Roseolovirus / genetics*
  • Sequence Analysis, DNA