AmiGO: online access to ontology and annotation data

doi:10.1093/bioinformatics/btn615

. 2009 Jan 15;25(2):288-9.

doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25.

AmiGO: online access to ontology and annotation data

Seth Carbon¹, Amelia Ireland, Christopher J Mungall, ShengQiang Shu, Brad Marshall, Suzanna Lewis; AmiGO Hub; Web Presence Working Group

Collaborators, Affiliations

Collaborators

Amelia Ireland, Jane Lomax, Seth Carbon, Chris Mungall, Benjamin Hitz, Rama Balakrishnan, Mary Dolan, Valerie Wood, Eurie Hong, Pascale Gaudet

Affiliation

¹ Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. sjcarbon@berkeleybop.org

PMID: 19033274
PMCID: PMC2639003
DOI: 10.1093/bioinformatics/btn615

AmiGO: online access to ontology and annotation data

Seth Carbon et al. Bioinformatics. 2009.

. 2009 Jan 15;25(2):288-9.

doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25.

Authors

Seth Carbon¹, Amelia Ireland, Christopher J Mungall, ShengQiang Shu, Brad Marshall, Suzanna Lewis; AmiGO Hub; Web Presence Working Group

Collaborators

Amelia Ireland, Jane Lomax, Seth Carbon, Chris Mungall, Benjamin Hitz, Rama Balakrishnan, Mary Dolan, Valerie Wood, Eurie Hong, Pascale Gaudet

Affiliation

¹ Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. sjcarbon@berkeleybop.org

PMID: 19033274
PMCID: PMC2639003
DOI: 10.1093/bioinformatics/btn615

Abstract

AmiGO is a web application that allows users to query, browse and visualize ontologies and related gene product annotation (association) data. AmiGO can be used online at the Gene Ontology (GO) website to access the data provided by the GO Consortium; it can also be downloaded and installed to browse local ontologies and annotations. AmiGO is free open source software developed and maintained by the GO Consortium.

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References

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1. Boyle EI, et al. GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics. 2004;20:3710–3715. - PMC - PubMed
1. Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nature Genet. 2000;25:25–29. - PMC - PubMed

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[1] Altschul SF, et al. Basic local alignment search tool. J. Mol. Biol. 1990;215:403–410. - PubMed

[2] Altschul SF, et al. Basic local alignment search tool. J. Mol. Biol. 1990;215:403–410. - PubMed

[3] Boyle EI, et al. GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics. 2004;20:3710–3715. - PMC - PubMed

[4] Boyle EI, et al. GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics. 2004;20:3710–3715. - PMC - PubMed

[5] Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nature Genet. 2000;25:25–29. - PMC - PubMed

[6] Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nature Genet. 2000;25:25–29. - PMC - PubMed

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AmiGO: online access to ontology and annotation data

Collaborators

Affiliation

AmiGO: online access to ontology and annotation data

Authors

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Affiliation

Abstract

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LinkOut - more resources

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