Dietary selenium (Se) requirements in rats have been based largely upon glutathione peroxidase-1 (Gpx1) enzyme activity and Gpx1 mRNA levels can also be used to determine Se requirements. The identification of the complete selenoprotein proteome suggests that we might identify additional useful molecular biomarkers for assessment of Se status. To characterize Se regulation of the entire rat selenoproteome, weanling male rats were fed a Se-deficient diet (<0.01 microg Se/g) supplemented with graded levels of Se (0-0.8 microg/g diet) for 28 d, Se status was determined by tissue Se concentration and selenoenzyme activity, and selenoprotein mRNA abundance in liver, kidney, and muscle was determined by quantitative real-time-PCR. Tissue Se and selenoenzyme biomarkers indicated that minimal Se requirements were <or=0.1 microg Se/g diet for most biomarkers. Liver Gpx1 mRNA also decreased to <10% of Se-adequate levels, with a minimum Se requirement at 0.07 microg/g diet. Five selenoprotein mRNA in liver, 4 in kidney, and 2 in muscle decreased to <41% of Se-adequate levels, all with minimum Se requirements at <or=0.07 microg/g diet; the majority of selenoprotein mRNA in each tissue were not significantly regulated by Se status, and 1 selenoprotein, selenophosphate synthetase-2, was upregulated in Se-deficient kidney. Plateau breakpoints for all regulated selenoprotein mRNA were very similar, suggesting that 1 underlying mechanism is in play in Se regulation of selenoprotein mRNA. Lastly, we did not find any selenoprotein mRNA that could be used as biomarkers for super-nutritional/anticarcinogenic levels (up to 0.8 microg Se/g diet) of Se.