Sugar-complex structures of the C-half domain of the galactose-binding lectin EW29 from the earthworm Lumbricus terrestris

Acta Crystallogr D Biol Crystallogr. 2009 Jan;65(Pt 1):49-57. doi: 10.1107/S0907444908037451. Epub 2008 Dec 18.

Abstract

R-type lectins are one of the most prominent types of lectin; they exist ubiquitously in nature and mainly bind to the galactose unit of sugar chains. The galactose-binding lectin EW29 from the earthworm Lumbricus terrestris belongs to the R-type lectin family as represented by the plant lectin ricin. It shows haemagglutination activity and is composed of a single peptide chain that includes two homologous domains: N-terminal and C-terminal domains. A truncated mutant of EW29 comprising the C-terminal domain (rC-half) has haemagglutination activity by itself. In order to clarify how rC-half recognizes ligands and shows haemagglutination activity, X-ray crystal structures of rC-half in complex with D-lactose and N-acetyl-D-galactosamine have been determined. The structure of rC-half is similar to that of the ricin B chain and consists of a beta-trefoil fold; the fold is further divided into three similar subdomains referred to as subdomains alpha, beta and gamma, which are gathered around the pseudo-threefold axis. The structures of sugar complexes demonstrated that subdomains alpha and gamma of rC-half bind terminal galactosyl and N-acetylgalactosaminyl glycans. The sugar-binding properties are common to both ligands in both subdomains and are quite similar to those of ricin B chain-lactose complexes. These results indicate that the C-terminal domain of EW29 uses these two galactose-binding sites for its function as a single-domain-type haemagglutinin.

MeSH terms

  • Acetylgalactosamine / metabolism
  • Amino Acid Sequence
  • Animals
  • Carbohydrates / chemistry
  • Crystallography, X-Ray
  • Galactose / metabolism
  • Galectins / chemistry*
  • Galectins / genetics
  • Galectins / metabolism
  • Lactose / metabolism
  • Molecular Sequence Data
  • Multiprotein Complexes / metabolism
  • Mutant Proteins / chemistry*
  • Mutant Proteins / genetics
  • Mutant Proteins / metabolism
  • Oligochaeta*
  • Protein Binding
  • Protein Conformation
  • Ricin / chemistry*
  • Ricin / metabolism
  • Sequence Deletion
  • Structure-Activity Relationship

Substances

  • Carbohydrates
  • EW29 lectin, Lumbricus terrestris
  • Galectins
  • Multiprotein Complexes
  • Mutant Proteins
  • Ricin
  • Lactose
  • Acetylgalactosamine
  • Galactose

Associated data

  • PDB/2ZQN
  • PDB/2ZQO