X-ray crystal structure of GarR-tartronate semialdehyde reductase from Salmonella typhimurium

J Struct Funct Genomics. 2009 Sep;10(3):249-53. doi: 10.1007/s10969-009-9059-x. Epub 2009 Jan 28.

Abstract

Tartronate semialdehyde reductases (TSRs), also known as 2-hydroxy-3-oxopropionate reductases, catalyze the reduction of tartronate semialdehyde using NAD as cofactor in the final stage of D-glycerate biosynthesis. These enzymes belong to family of structurally and mechanically related beta-hydroxyacid dehydrogenases which differ in substrate specificity and catalyze reactions in specific metabolic pathways. Here, we present the crystal structure of GarR a TSR from Salmonella typhimurium determined by the single-wavelength anomalous diffraction method and refined to 1.65 A resolution. The active site of the enzyme contains L-tartrate which most likely mimics a position of a glycerate which is a product of the enzyme reaction. The analysis of the TSR structure shows also a putative NADPH binding site in the enzyme.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alcohol Oxidoreductases / chemistry*
  • Alcohol Oxidoreductases / metabolism
  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Conformation
  • Salmonella typhimurium / enzymology*
  • Salmonella typhimurium / metabolism
  • Selenomethionine / chemistry
  • Selenomethionine / metabolism
  • Substrate Specificity

Substances

  • Bacterial Proteins
  • Selenomethionine
  • Alcohol Oxidoreductases
  • 2-hydroxy-3-oxopropionate reductase