Genetic modulation of striatal volume by loci on Chrs 6 and 17 in BXD recombinant inbred mice

Genes Brain Behav. 2009 Apr;8(3):296-308. doi: 10.1111/j.1601-183X.2009.00473.x. Epub 2009 Jan 12.


Natural variation in the absolute and relative size of different parts of the human brain is substantial, with a range that often exceeds a factor of 2. Much of this variation is generated by the cumulative effects of sets of unknown gene variants that modulate the proliferation, growth and death of neurons and glial cells. Discovering and testing the functions of these genes should contribute significantly to our understanding of differences in brain development, behavior and disease susceptibility. We have exploited a large population of genetically well-characterized strains of mice (BXD recombinant inbred strains) to map gene variants that influence the volume of the dorsal striatum (caudate-putamen without nucleus accumbens). We used unbiased methods to estimate volumes bilaterally in a sex-balanced sample taken from the Mouse Brain Library ( We generated a matched microarray data set to efficiently evaluate candidate genes ( As in humans, volume of the striatum is highly heritable, with greater than twofold differences among strains. We mapped a locus that modulates striatal volume on chromosome (Chr) 6 at 88 +/- 5 Mb. We also uncovered an epistatic interaction between loci on Chr 6 and Chr 17 that modulates striatal volume. Using bioinformatic tools and the corresponding expression database, we have identified positional candidates in these quantitative trait locus intervals.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Chromosome Mapping / methods
  • Chromosomes, Mammalian / genetics
  • Computational Biology / methods
  • Corpus Striatum / anatomy & histology*
  • Corpus Striatum / cytology
  • Corpus Striatum / metabolism
  • Crosses, Genetic
  • Databases, Genetic
  • Female
  • Gene Expression Profiling / methods
  • Gene Expression Regulation, Developmental
  • Genetic Variation / genetics*
  • Genotype
  • Male
  • Mice
  • Mice, Inbred Strains
  • Neurogenesis / genetics
  • Oligonucleotide Array Sequence Analysis
  • Organ Size / genetics
  • Phenotype
  • Quantitative Trait Loci / genetics
  • Species Specificity