An examination of phylogenetic models of substitution rate variation among lineages

Biol Lett. 2009 Jun 23;5(3):421-4. doi: 10.1098/rsbl.2008.0729. Epub 2009 Feb 25.

Abstract

Molecular evolutionary rates can show significant variation among lineages, complicating the task of estimating substitution rates and divergence times using phylogenetic methods. Accordingly, relaxed molecular clock models have been developed to accommodate such rate heterogeneity, but these often make the assumption of rate autocorrelation among lineages. In this paper, I examine the validity of this assumption.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / genetics*
  • Evolution, Molecular*
  • Models, Genetic
  • Mutation
  • Phylogeny*

Substances

  • DNA