Methanolobus profundi sp. nov., a methylotrophic methanogen isolated from deep subsurface sediments in a natural gas field

Int J Syst Evol Microbiol. 2009 Apr;59(Pt 4):714-8. doi: 10.1099/ijs.0.001677-0.

Abstract

A mesophilic, methylotrophic methanogen, strain MobM(T), was isolated from a natural gas field in Japan. Strain MobM(T) grew on methanol and methylamines, but not on H(2)/CO(2), formate, acetate or dimethyl sulfide. The cells were motile, irregular cocci (diameter, 0.9-1.2 microm) and occurred singly, in pairs, as tetracocci or (occasionally) as aggregates. Strain MobM(T) grew at 9-37 degrees C (optimally at 30 degrees C) and at pH 6.1-7.8 (optimally at pH 6.5). Sodium and magnesium were required for growth, at 0.1-1.0 M Na(+) (optimally at 0.35 M) and 10-400 mM Mg(2+) (optimally at 15-25 mM). The G+C content of the genomic DNA was 42.4 mol%. 16S rRNA gene sequencing revealed that the isolate is a member of the genus Methanolobus, but distinct from its closest neighbours, Methanolobus tindarius DSM 2278(T) (sequence similarity, 98.0 %) and Methanolobus vulcani DSM 3029(T) (98.1 %). On the basis of phenotypic and phylogenetic features of MobM(T), it is clear that this strain represents a novel species of the genus Methanolobus, for which the name Methanolobus profundi sp. nov. is proposed. The type strain is MobM(T) (=DSM 21213(T)=NBRC 104158(T)).

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Geologic Sediments / microbiology*
  • Japan
  • Magnesium / metabolism
  • Methane / metabolism*
  • Methanol / metabolism
  • Methanosarcinaceae / classification*
  • Methanosarcinaceae / genetics
  • Methanosarcinaceae / isolation & purification*
  • Methanosarcinaceae / metabolism
  • Methylamines / metabolism
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Sodium / metabolism

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Methylamines
  • RNA, Ribosomal, 16S
  • Sodium
  • Magnesium
  • Methane
  • Methanol

Associated data

  • GENBANK/AB370245