A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution

Chem Commun (Camb). 2009 Apr 21:(15):2017-9. doi: 10.1039/b822781k. Epub 2009 Feb 26.

Abstract

Crystal structures of A-form and B-form DNA duplexes containing 2'-S-methyl-uridines reveal that the modified residues adopt a RNA-like C3'-endo pucker, illustrating that the replacement of electronegative oxygen at the 2'-carbon of RNA by sulfur does not appear to fundamentally alter the conformational preference of the sugar in the oligonucleotide context and sterics trump stereoelectronics.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Crystallography, X-Ray*
  • DNA / chemistry*
  • Nucleic Acid Conformation
  • RNA / chemistry
  • Sulfhydryl Compounds / chemistry*
  • Uridine / analogs & derivatives
  • Uridine / chemistry*

Substances

  • Sulfhydryl Compounds
  • RNA
  • DNA
  • Uridine